Variant report

Variant	rs73366900
Chromosome Location	chr6:11398776-11398777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11396064..11399493-chr6:11408571..11410714,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1012503	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10947217	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751505	0.84[AMR][1000 genomes]
rs11756278	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12661807	0.83[AMR][1000 genomes]
rs17507230	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074864	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4318876	0.95[ASN][1000 genomes]
rs4713459	0.83[AMR][1000 genomes]
rs4713474	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713475	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713478	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55918622	0.95[ASN][1000 genomes]
rs56144403	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155385	0.95[ASN][1000 genomes]
rs56317766	0.95[ASN][1000 genomes]
rs56711429	0.83[AMR][1000 genomes]
rs59349836	0.95[ASN][1000 genomes]
rs61650802	0.95[ASN][1000 genomes]
rs6901538	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72832925	0.80[AMR][1000 genomes]
rs72832932	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72832935	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72832944	0.95[ASN][1000 genomes]
rs7740502	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394200-11398800	Weak transcription	Fetal Lung	lung
3	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11395000-11398800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:11395200-11398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:11397400-11400200	Enhancers	Fetal Intestine Large	intestine
7	chr6:11397600-11400000	Enhancers	Fetal Intestine Small	intestine
8	chr6:11397800-11399600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:11397800-11400000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:11398000-11398800	Enhancers	Lung	lung
11	chr6:11398000-11398800	Enhancers	Spleen	Spleen
12	chr6:11398000-11399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:11398000-11399000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:11398000-11399200	Enhancers	Liver	Liver
15	chr6:11398000-11399400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:11398400-11398800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:11398400-11402800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:11398600-11399000	Enhancers	Adipose Nuclei	Adipose
19	chr6:11398600-11399000	Enhancers	Fetal Kidney	kidney
20	chr6:11398600-11399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:11398600-11399200	Enhancers	A549	lung
22	chr6:11398600-11399400	Flanking Active TSS	HepG2	liver
23	chr6:11398600-11400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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