Variant report

Variant	rs72832925
Chromosome Location	chr6:11358167-11358168
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11229074..11235774-chr6:11355894..11361748,7	MCF-7	breast:
2	chr6:11344982..11346755-chr6:11356933..11360396,3	MCF-7	breast:
3	chr6:11357315..11359191-chr6:11373053..11375273,2	K562	blood:
4	chr6:11356223..11359281-chr6:11494815..11498233,5	MCF-7	breast:
5	chr6:11229225..11235286-chr6:11354946..11358883,9	MCF-7	breast:
6	chr6:11357820..11359375-chr6:11361322..11362999,2	MCF-7	breast:
7	chr6:11341903..11348078-chr6:11354165..11360055,8	MCF-7	breast:
8	chr6:11356402..11359256-chr6:11386897..11390575,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1012503	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10947217	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11751505	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11756278	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12661807	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17507230	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4074864	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4713459	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4713474	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713475	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713478	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56711429	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61543598	0.86[AFR][1000 genomes]
rs6901538	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72832932	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72832935	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73366900	0.80[AMR][1000 genomes]
rs7740502	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11353200-11358600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:11353200-11359000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr6:11353600-11358800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:11353600-11359200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:11353800-11358600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:11353800-11360000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:11354000-11358200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:11354200-11358200	Enhancers	Primary T cells from cord blood	blood
9	chr6:11354800-11359200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:11355000-11358200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:11355000-11364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:11355000-11367400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:11355200-11359000	Weak transcription	HMEC	breast
14	chr6:11355200-11359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:11355200-11360000	Weak transcription	Right Ventricle	heart
16	chr6:11355200-11360400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:11355200-11361000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:11355200-11365200	Weak transcription	Left Ventricle	heart
19	chr6:11355200-11370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:11355400-11359400	Weak transcription	Thymus	Thymus
21	chr6:11356000-11358200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:11356000-11360000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:11356200-11358200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:11356200-11358200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr6:11356400-11359800	Enhancers	Stomach Mucosa	stomach
26	chr6:11356600-11358200	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:11357000-11358200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:11357000-11358800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr6:11357000-11360400	Enhancers	Placenta	Placenta
30	chr6:11357200-11358200	Enhancers	Colonic Mucosa	Colon
31	chr6:11357200-11362800	Enhancers	HepG2	liver
32	chr6:11357200-11371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:11357400-11358200	Enhancers	Fetal Kidney	kidney
34	chr6:11357400-11358800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:11357400-11359200	Enhancers	Esophagus	oesophagus
36	chr6:11357600-11358200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:11357600-11358600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:11357600-11359000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:11357600-11359200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:11357600-11359800	Strong transcription	GM12878-XiMat	blood
41	chr6:11357600-11360800	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr6:11357600-11362600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:11357600-11364200	Weak transcription	Right Atrium	heart
44	chr6:11357600-11365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:11357600-11367600	Weak transcription	Aorta	Aorta
46	chr6:11357800-11358600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr6:11357800-11358800	Weak transcription	Adipose Nuclei	Adipose
48	chr6:11357800-11358800	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:11357800-11359000	Weak transcription	Primary B cells from cord blood	blood
50	chr6:11357800-11359000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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