Variant report

Variant	rs6902321
Chromosome Location	chr6:35670607-35670608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35655663..35658239-chr6:35669064..35672601,3	K562	blood:
2	chr6:35670182..35673104-chr6:35694466..35696068,2	K562	blood:
3	chr6:35669147..35672136-chr6:35698137..35700263,2	K562	blood:
4	chr6:35668653..35671140-chr6:35695541..35697338,2	K562	blood:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10947563	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs12153967	0.87[EUR][1000 genomes]
rs2395635	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[EUR][1000 genomes]
rs3798347	0.80[JPT][hapmap]
rs3800372	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4711429	0.85[CEU][hapmap]
rs4713904	0.81[CHB][hapmap]
rs4713911	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713915	0.85[EUR][1000 genomes]
rs4713916	0.90[EUR][1000 genomes]
rs6899478	0.81[EUR][1000 genomes]
rs6900592	0.84[EUR][1000 genomes]
rs6905674	0.81[EUR][1000 genomes]
rs6912833	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs6929523	0.81[EUR][1000 genomes]
rs6931118	0.85[EUR][1000 genomes]
rs7759392	0.83[EUR][1000 genomes]
rs7763535	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs9296157	0.83[JPT][hapmap]
rs9296158	0.80[JPT][hapmap]
rs9296159	0.83[EUR][1000 genomes]
rs9357201	0.84[EUR][1000 genomes]
rs9357202	0.84[EUR][1000 genomes]
rs9368881	0.85[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs9368885	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380525	0.86[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs9380526	0.85[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9394309	0.81[CHB][hapmap]
rs9394311	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394313	0.84[EUR][1000 genomes]
rs9394314	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs943297	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[EUR][1000 genomes]
rs9462103	0.87[EUR][1000 genomes]
rs9462104	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs9470080	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
8	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6902321	FKBP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35657200-35671400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35657200-35671400	Weak transcription	Thymus	Thymus
3	chr6:35666600-35671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:35667200-35681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:35667600-35671400	Weak transcription	Small Intestine	intestine
6	chr6:35670000-35684600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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