Variant report

Variant	rs9357202
Chromosome Location	chr6:35616673-35616674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35615240..35617365-chr6:35622051..35624725,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10947563	0.85[EUR][1000 genomes]
rs1360780	0.86[EUR][1000 genomes]
rs1591365	0.86[EUR][1000 genomes]
rs2395634	0.85[EUR][1000 genomes]
rs3798347	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800372	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713903	0.88[EUR][1000 genomes]
rs4713904	0.88[EUR][1000 genomes]
rs4713906	0.86[EUR][1000 genomes]
rs4713911	0.85[EUR][1000 genomes]
rs6457839	0.87[EUR][1000 genomes]
rs6899478	0.85[EUR][1000 genomes]
rs6902124	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902321	0.84[EUR][1000 genomes]
rs6912833	0.86[EUR][1000 genomes]
rs6929523	0.85[EUR][1000 genomes]
rs6931118	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751598	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759392	0.84[EUR][1000 genomes]
rs7763535	0.84[EUR][1000 genomes]
rs9296158	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9296159	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357201	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368878	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368881	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368885	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380525	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380526	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394309	0.88[EUR][1000 genomes]
rs9394311	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470080	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1848884	chr6:35607571-35629669	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1811255	chr6:35614026-35628841	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9357202	FKBP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
2	chr6:35605000-35621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35608200-35622400	Weak transcription	Fetal Heart	heart
4	chr6:35609000-35622400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:35609000-35622400	Weak transcription	Esophagus	oesophagus
6	chr6:35609400-35617400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:35609400-35622400	Weak transcription	Lung	lung
8	chr6:35609400-35622400	Weak transcription	Ovary	ovary
9	chr6:35609400-35630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:35609400-35630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:35609400-35630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:35609400-35630800	Weak transcription	Gastric	stomach
13	chr6:35609600-35630200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:35609600-35630600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:35609800-35617400	Weak transcription	Aorta	Aorta
16	chr6:35610000-35630800	Weak transcription	Spleen	Spleen
17	chr6:35610000-35630800	Weak transcription	HMEC	breast
18	chr6:35610400-35630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:35610600-35625000	Weak transcription	Right Ventricle	heart
20	chr6:35610600-35630000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:35610600-35630000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:35610600-35630000	Weak transcription	Pancreas	Pancrea
23	chr6:35610600-35630400	Weak transcription	HUVEC	blood vessel
24	chr6:35610600-35630800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:35610600-35631200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:35611200-35616800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:35611200-35631000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:35611400-35630800	Weak transcription	Brain Substantia Nigra	brain
29	chr6:35611600-35630800	Weak transcription	Brain Anterior Caudate	brain
30	chr6:35611600-35631400	Weak transcription	Primary B cells from cord blood	blood
31	chr6:35612200-35630800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:35613400-35621800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:35613400-35629800	Weak transcription	NHEK	skin
34	chr6:35613400-35630800	Weak transcription	Small Intestine	intestine
35	chr6:35613600-35630800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:35613600-35630800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:35614000-35617800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:35614000-35618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:35614000-35630800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:35614200-35618800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr6:35614200-35625600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:35614200-35630800	Weak transcription	Liver	Liver
43	chr6:35614400-35618600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr6:35614600-35619000	Weak transcription	Fetal Thymus	thymus
45	chr6:35614600-35619400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:35614600-35630800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:35614800-35625000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:35615000-35616800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:35615000-35631000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:35615400-35618600	Weak transcription	K562	blood

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