Variant report

Variant	rs3798347
Chromosome Location	chr6:35601776-35601777
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35601393..35603122-chr6:35614137..35615978,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12055438	0.81[EUR][1000 genomes]
rs1360780	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591365	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2395634	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3800372	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3800373	0.94[CEU][hapmap];0.93[CHB][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs4713904	0.81[CHB][hapmap]
rs6902124	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902321	0.80[JPT][hapmap]
rs6929873	0.82[ASN][1000 genomes]
rs6931118	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7751598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296158	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9296159	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357201	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357202	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368881	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368885	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380522	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380525	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380526	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9470080	0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv517211	chr6:35502202-35607571	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3798347	FKBP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35545000-35601800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:35570200-35608600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35570800-35611400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:35571000-35602400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:35571200-35611800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:35574800-35607200	Weak transcription	Hela-S3	cervix
7	chr6:35575000-35611600	Strong transcription	Liver	Liver
8	chr6:35575600-35610400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:35577600-35613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:35579400-35603000	Weak transcription	HSMMtube	muscle
11	chr6:35579400-35603600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:35579400-35603800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:35579600-35604000	Weak transcription	Osteobl	bone
14	chr6:35580200-35602000	Weak transcription	Fetal Intestine Large	intestine
15	chr6:35583200-35608000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:35584200-35607600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:35585600-35610800	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:35585800-35607800	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:35586400-35606200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:35586800-35603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:35586800-35606000	Weak transcription	Primary B cells from cord blood	blood
22	chr6:35586800-35613800	Weak transcription	Fetal Stomach	stomach
23	chr6:35587000-35607800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:35587000-35607800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:35587200-35606400	Weak transcription	Small Intestine	intestine
26	chr6:35587800-35603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:35588000-35602000	Weak transcription	Ovary	ovary
28	chr6:35588000-35603000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:35588000-35603800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:35588000-35604000	Weak transcription	Brain Angular Gyrus	brain
31	chr6:35588000-35604000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:35588000-35604400	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:35588000-35606600	Weak transcription	Brain Anterior Caudate	brain
34	chr6:35588000-35607200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:35588000-35608400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:35588200-35602000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr6:35588200-35603400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
39	chr6:35588400-35604200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:35588600-35606200	Weak transcription	Gastric	stomach
41	chr6:35589000-35607800	Weak transcription	NHDF-Ad	bronchial
42	chr6:35590200-35602200	Weak transcription	Right Atrium	heart
43	chr6:35590200-35602800	Weak transcription	Aorta	Aorta
44	chr6:35591600-35602000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:35592000-35605600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:35592000-35610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:35592000-35611400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:35592200-35603000	Weak transcription	Lung	lung
49	chr6:35592800-35601800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:35592800-35602200	Weak transcription	Pancreas	Pancrea

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