Variant report

Variant	rs6905136
Chromosome Location	chr6:82692744-82692745
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6910544	1.00[AMR][1000 genomes]
rs6914373	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9765890	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358208	chr6:82677282-82700658	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82691200-82693200	Enhancers	HSMM	muscle
2	chr6:82691800-82693000	Enhancers	NHDF-Ad	bronchial
3	chr6:82691800-82693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82691800-82694200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:82692000-82694800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:82692200-82694400	Weak transcription	Hela-S3	cervix
7	chr6:82692200-82694800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:82692200-82694800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:82692200-82694800	Weak transcription	HMEC	breast
10	chr6:82692200-82697800	Weak transcription	Osteobl	bone
11	chr6:82692400-82693400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:82692400-82695000	Weak transcription	NHEK	skin
13	chr6:82692600-82694800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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