Variant report

Variant	rs6910544
Chromosome Location	chr6:82781169-82781170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6905136	1.00[AMR][1000 genomes]
rs6914373	1.00[AMR][1000 genomes]
rs9765890	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82768400-82782600	Weak transcription	Left Ventricle	heart
2	chr6:82777000-82781800	Weak transcription	NHDF-Ad	bronchial
3	chr6:82777200-82781600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:82777200-82782600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82777400-82781400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:82778800-82784600	Weak transcription	Right Ventricle	heart
7	chr6:82780800-82781200	Enhancers	Fetal Muscle Leg	muscle
8	chr6:82781000-82781200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:82781000-82784600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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