Variant report

Variant	rs6915009
Chromosome Location	chr6:81774046-81774047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12333152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1460186	1.00[AMR][1000 genomes]
rs16892458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892604	1.00[EUR][1000 genomes]
rs16892651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892697	1.00[EUR][1000 genomes]
rs4351211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4351212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4470815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4543324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55908144	1.00[EUR][1000 genomes]
rs56790428	1.00[EUR][1000 genomes]
rs6454201	1.00[EUR][1000 genomes]
rs6899674	1.00[EUR][1000 genomes]
rs6901453	1.00[EUR][1000 genomes]
rs6938275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940665	1.00[EUR][1000 genomes]
rs73463365	1.00[EUR][1000 genomes]
rs73471358	1.00[EUR][1000 genomes]
rs7750118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9449180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9449181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9449183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830709	chr6:81615127-81793247	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886321	chr6:81707510-81934605	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1016229	chr6:81722231-81881073	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830710	chr6:81727702-81889039	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033949	chr6:81731577-81872706	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886322	chr6:81745936-81812816	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1021359	chr6:81763673-81819933	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886323	chr6:81769638-81841444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv886324	chr6:81769638-81848131	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv830711	chr6:81771575-81937222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81773800-81774600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:81774000-81774400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:81774000-81781000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links