Variant report

Variant	rs6915747
Chromosome Location	chr6:144907979-144907980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144901193..144904643-chr6:144905764..144908311,3	K562	blood:
2	chr6:144906202..144908261-chr6:145458578..145460342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152818	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10499231	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12195433	0.81[CEU][hapmap]
rs12196553	0.81[TSI][hapmap]
rs12205822	0.81[CEU][hapmap]
rs1358433	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2091485	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2876586	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3793134	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3793135	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3812245	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3812246	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4499947	0.92[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4896729	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570637	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739143	0.80[CEU][hapmap]
rs7749805	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749957	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754789	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7767389	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7770106	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7770800	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376822	0.96[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs9390171	1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390173	0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs9399478	0.96[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs9399479	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496995	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497006	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs951571	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144898600-144912800	Weak transcription	Gastric	stomach
4	chr6:144899600-144909000	Weak transcription	Aorta	Aorta
5	chr6:144899600-144913800	Weak transcription	Lung	lung
6	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
7	chr6:144899800-144914400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:144899800-144914400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:144899800-144917400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:144900000-144915400	Weak transcription	Pancreas	Pancrea
11	chr6:144902400-144908400	Weak transcription	HUVEC	blood vessel
12	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:144904600-144910400	Weak transcription	Right Ventricle	heart
15	chr6:144904600-144913000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:144904600-144913600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:144904600-144913800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:144904600-144914400	Weak transcription	HSMM	muscle
19	chr6:144904600-144915800	Weak transcription	Psoas Muscle	Psoas
20	chr6:144904600-144915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:144904600-144916400	Weak transcription	Fetal Stomach	stomach
22	chr6:144904600-144921600	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:144904600-144923600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
25	chr6:144904800-144908200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:144904800-144908400	Weak transcription	Fetal Intestine Large	intestine
27	chr6:144904800-144908800	Weak transcription	HepG2	liver
28	chr6:144904800-144909000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:144904800-144911000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:144904800-144913400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:144904800-144914200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:144904800-144914200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:144904800-144914200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:144904800-144914600	Weak transcription	Spleen	Spleen
35	chr6:144904800-144915800	Weak transcription	NH-A	brain
36	chr6:144904800-144921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:144904800-144929000	Weak transcription	Left Ventricle	heart
38	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:144905000-144908000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:144905000-144908600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:144905000-144908600	Weak transcription	Adipose Nuclei	Adipose
42	chr6:144905000-144908800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:144905000-144909000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:144905000-144909800	Weak transcription	Fetal Kidney	kidney
45	chr6:144905200-144912200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:144905400-144908400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:144905400-144923200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:144905400-144923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:144905600-144908200	Weak transcription	Primary B cells from cord blood	blood
50	chr6:144905800-144908200	Weak transcription	Monocytes-CD14+_RO01746	blood

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