Variant report

Variant	rs951571
Chromosome Location	chr6:144945524-144945525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10499231	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1358433	0.88[EUR][1000 genomes]
rs2091485	0.87[EUR][1000 genomes]
rs2876586	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs3793134	0.87[EUR][1000 genomes]
rs3793135	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs3812245	0.84[EUR][1000 genomes]
rs3812246	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4896729	0.96[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6570637	0.96[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915747	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7749805	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7749957	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7754789	0.96[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7767389	0.88[EUR][1000 genomes]
rs7770106	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7770800	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376822	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs9390171	0.89[EUR][1000 genomes]
rs9390173	0.84[EUR][1000 genomes]
rs9399478	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs9399479	0.87[EUR][1000 genomes]
rs9496995	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs9497006	0.96[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
2	chr6:144914800-144960000	Weak transcription	Lung	lung
3	chr6:144929600-144955200	Weak transcription	HepG2	liver
4	chr6:144929800-144945600	Weak transcription	Left Ventricle	heart
5	chr6:144930000-144945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144939000-144945600	Weak transcription	Pancreas	Pancrea
13	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:144939200-144945800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:144940600-144945800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:144941200-144947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
20	chr6:144943000-144947600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:144943600-144953800	Weak transcription	Gastric	stomach
22	chr6:144944200-144946200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:144944200-144951200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:144944400-144945800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:144945200-144945600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:144945200-144945600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:144945400-144946000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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