Variant report

Variant	rs9497006
Chromosome Location	chr6:144889002-144889003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144884683..144886596-chr6:144887876..144890608,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10499231	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205822	0.81[TSI][hapmap]
rs1358433	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2091485	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2876586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3793134	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793135	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812245	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3812246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4499947	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896729	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570637	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6915747	0.96[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6941915	0.80[EUR][1000 genomes]
rs7739143	0.81[TSI][hapmap]
rs7749805	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749957	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7754789	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7767389	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7770106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7770800	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9376822	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390171	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390173	0.84[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs9399478	0.92[CEU][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs9399479	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9496995	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs951571	0.96[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144850400-144903200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:144850400-144903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:144850400-144904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:144853600-144896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:144857200-144904000	Weak transcription	Psoas Muscle	Psoas
7	chr6:144864800-144899000	Weak transcription	Small Intestine	intestine
8	chr6:144867400-144903800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:144870800-144898400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:144872000-144903000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:144873000-144903200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:144873000-144903800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:144874000-144904200	Weak transcription	Placenta	Placenta
14	chr6:144877000-144895600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:144877000-144898000	Weak transcription	Right Ventricle	heart
16	chr6:144877000-144898200	Weak transcription	Fetal Intestine Small	intestine
17	chr6:144877000-144903000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:144877000-144904200	Weak transcription	Fetal Stomach	stomach
19	chr6:144878000-144903400	Weak transcription	Fetal Brain Male	brain
20	chr6:144878400-144898000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:144878400-144899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:144878600-144898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:144878600-144898200	Weak transcription	Lung	lung
24	chr6:144878600-144901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:144878800-144898000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr6:144879000-144890400	Weak transcription	Liver	Liver
27	chr6:144879000-144890800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:144879000-144890800	Weak transcription	Pancreas	Pancrea
29	chr6:144879000-144898000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:144879000-144898200	Weak transcription	Esophagus	oesophagus
31	chr6:144879000-144898200	Weak transcription	Fetal Intestine Large	intestine
32	chr6:144879000-144898200	Weak transcription	Spleen	Spleen
33	chr6:144879000-144898200	Weak transcription	GM12878-XiMat	blood
34	chr6:144879200-144898800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:144879200-144899800	Weak transcription	NHLF	lung
36	chr6:144879200-144904000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:144879600-144898000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:144879600-144898200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:144879600-144898200	Weak transcription	NHDF-Ad	bronchial
40	chr6:144880800-144892000	Strong transcription	Primary B cells from cord blood	blood
41	chr6:144881400-144891000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:144881400-144898400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:144881600-144892600	Weak transcription	A549	lung
44	chr6:144881600-144895200	Weak transcription	NHEK	skin
45	chr6:144881600-144895400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:144881600-144899200	Weak transcription	HSMMtube	muscle
47	chr6:144881800-144890800	Weak transcription	Aorta	Aorta
48	chr6:144881800-144890800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:144881800-144891600	Weak transcription	NH-A	brain
50	chr6:144881800-144895000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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