Variant report

Variant	rs6916177
Chromosome Location	chr6:144460762-144460763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1040464	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12202421	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12204782	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12208207	1.00[ASN][1000 genomes]
rs34652974	1.00[ASN][1000 genomes]
rs4463275	0.91[ASN][1000 genomes]
rs6570607	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs6570609	0.99[EUR][1000 genomes]
rs67007116	0.92[EUR][1000 genomes]
rs7747493	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7769877	1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes]
rs9496876	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs990308	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6916177	GSTM1	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144455600-144461800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:144460000-144466000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:144460400-144461200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr6:144460400-144463200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:144460600-144460800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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