Variant report

Variant	rs6916705
Chromosome Location	chr6:15027286-15027287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15026938..15027776-chr6:15221914..15222444,2	MCF-7	breast:
2	chr6:15025766..15028109-chr6:15243757..15247549,3	MCF-7	breast:
3	chr6:15026381..15028828-chr6:15035985..15038889,3	MCF-7	breast:
4	chr6:15023186..15025452-chr6:15025513..15027859,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4518500	0.97[ASN][1000 genomes]
rs4580854	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4642477	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883454	chr6:15009137-15081252	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1015671	chr6:15027130-15063152	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1026368	chr6:15027130-15063790	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15018400-15029200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:15022200-15031800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15022400-15032600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:15024000-15037000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:15026800-15028000	Enhancers	HepG2	liver
6	chr6:15027000-15027400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:15027000-15027400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:15027000-15027400	Enhancers	Colon Smooth Muscle	Colon
9	chr6:15027000-15027400	Enhancers	Fetal Kidney	kidney
10	chr6:15027000-15027400	Enhancers	Right Atrium	heart
11	chr6:15027000-15027400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:15027000-15027600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:15027000-15027600	Enhancers	Aorta	Aorta
14	chr6:15027000-15027600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr6:15027000-15027600	Enhancers	Fetal Muscle Leg	muscle
16	chr6:15027000-15027600	Enhancers	Stomach Mucosa	stomach
17	chr6:15027000-15027600	Flanking Active TSS	A549	lung
18	chr6:15027000-15027600	Enhancers	Osteobl	bone
19	chr6:15027000-15027800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:15027000-15027800	Enhancers	Liver	Liver
21	chr6:15027000-15027800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:15027200-15027800	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:15027200-15029000	Weak transcription	Fetal Thymus	thymus

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