Variant report

Variant	rs6921913
Chromosome Location	chr6:16041259-16041260
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1267720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342745	1.00[AMR][1000 genomes]
rs1891520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327946	1.00[AMR][1000 genomes]
rs4352685	1.00[AMR][1000 genomes]
rs4502936	1.00[AMR][1000 genomes]
rs6459444	1.00[AMR][1000 genomes]
rs6925676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931835	1.00[AMR][1000 genomes]
rs7453386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749125	1.00[AMR][1000 genomes]
rs7755207	1.00[AFR][1000 genomes]
rs7771374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs808367	1.00[AMR][1000 genomes]
rs9464855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462642	chr6:16019115-16056026	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv601007	chr6:16019115-16056026	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16040600-16041400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:16041000-16043400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:16041200-16041400	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links