Variant report

Variant	rs6922883
Chromosome Location	chr6:121775330-121775331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17052911	1.00[ASN][1000 genomes]
rs55839853	1.00[EUR][1000 genomes]
rs56923869	1.00[ASN][1000 genomes]
rs6915511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73528586	1.00[EUR][1000 genomes]
rs73530210	1.00[EUR][1000 genomes]
rs73530224	1.00[EUR][1000 genomes]
rs73530247	1.00[EUR][1000 genomes]
rs73532237	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73767018	1.00[EUR][1000 genomes]
rs73769028	1.00[EUR][1000 genomes]
rs73769031	1.00[EUR][1000 genomes]
rs9482165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490263	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2763596	chr6:121774402-121788965	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121769200-121776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:121769200-121776800	Weak transcription	Esophagus	oesophagus
3	chr6:121769400-121776400	Weak transcription	Aorta	Aorta
4	chr6:121769400-121779000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:121770800-121778800	Weak transcription	A549	lung
6	chr6:121771000-121776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:121771400-121777200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:121772200-121777200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:121772200-121777200	Weak transcription	Osteobl	bone
10	chr6:121775000-121778400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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