Variant report

Variant	rs73530210
Chromosome Location	chr6:121704086-121704087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55839853	1.00[EUR][1000 genomes]
rs6915511	1.00[EUR][1000 genomes]
rs6922452	1.00[EUR][1000 genomes]
rs6922883	1.00[EUR][1000 genomes]
rs73528586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73530224	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73530247	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73532237	1.00[EUR][1000 genomes]
rs73767018	1.00[EUR][1000 genomes]
rs73769028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73769031	1.00[EUR][1000 genomes]
rs9482165	1.00[EUR][1000 genomes]
rs9490262	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv969324	chr6:121703134-121711366	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121698800-121705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121702600-121706000	Enhancers	Fetal Intestine Large	intestine
3	chr6:121702600-121706000	Enhancers	Fetal Intestine Small	intestine
4	chr6:121703000-121705600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:121703800-121704200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:121703800-121704800	Weak transcription	A549	lung
7	chr6:121703800-121705600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr6:121704000-121705600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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