Variant report

Variant	rs73532237
Chromosome Location	chr6:121771180-121771181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17052911	1.00[ASN][1000 genomes]
rs55839853	1.00[EUR][1000 genomes]
rs56923869	1.00[ASN][1000 genomes]
rs6915511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6922883	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528586	1.00[EUR][1000 genomes]
rs73530210	1.00[EUR][1000 genomes]
rs73530224	1.00[EUR][1000 genomes]
rs73530247	1.00[EUR][1000 genomes]
rs73767018	1.00[EUR][1000 genomes]
rs73769028	1.00[EUR][1000 genomes]
rs73769031	1.00[EUR][1000 genomes]
rs9482165	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490262	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490263	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121764200-121771800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:121764200-121775200	Weak transcription	Psoas Muscle	Psoas
3	chr6:121764600-121771600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:121765600-121771400	Strong transcription	NHDF-Ad	bronchial
5	chr6:121765600-121771600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:121766000-121772200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:121766200-121771200	Strong transcription	NH-A	brain
8	chr6:121766200-121772000	Strong transcription	HUVEC	blood vessel
9	chr6:121766400-121771400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:121766400-121771600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:121766600-121771400	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr6:121766600-121771600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:121766800-121771400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:121767000-121771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:121767000-121771400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:121767200-121771400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:121767600-121771400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:121767600-121771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:121767800-121771800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:121768000-121771400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:121768000-121771400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr6:121768200-121771600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:121768400-121771400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:121768800-121772200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:121769000-121772200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:121769200-121772400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:121769200-121772400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:121769200-121772800	Weak transcription	Fetal Stomach	stomach
29	chr6:121769200-121773000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:121769200-121774000	Weak transcription	Right Atrium	heart
31	chr6:121769200-121776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:121769200-121776800	Weak transcription	Esophagus	oesophagus
33	chr6:121769400-121772800	Weak transcription	HSMM	muscle
34	chr6:121769400-121772800	Weak transcription	NHLF	lung
35	chr6:121769400-121774200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:121769400-121776400	Weak transcription	Aorta	Aorta
37	chr6:121769400-121779000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:121769600-121772800	Weak transcription	Placenta	Placenta
39	chr6:121770000-121772200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:121770200-121772400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:121770200-121774800	Weak transcription	Ovary	ovary
42	chr6:121770400-121772200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:121770400-121772200	Strong transcription	Osteobl	bone
44	chr6:121770400-121772800	Weak transcription	NHEK	skin
45	chr6:121770600-121771600	Strong transcription	Left Ventricle	heart
46	chr6:121770600-121772200	Weak transcription	Fetal Intestine Large	intestine
47	chr6:121770600-121772400	Weak transcription	HMEC	breast
48	chr6:121770800-121771400	Strong transcription	Fetal Intestine Small	intestine
49	chr6:121770800-121772000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:121770800-121772000	Weak transcription	Fetal Heart	heart

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