Variant report

Variant	rs6927887
Chromosome Location	chr6:11913045-11913046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11908909..11912016-chr6:11912838..11916318,3	K562	blood:
2	chr6:11908210..11909975-chr6:11910502..11913371,2	K562	blood:
3	chr6:11908584..11910107-chr6:11912503..11915052,2	MCF-7	breast:
4	chr6:11658704..11660656-chr6:11912465..11915132,2	K562	blood:
5	chr6:11911981..11914460-chr6:11917367..11919083,2	K562	blood:
6	chr6:11911583..11913780-chr6:11914644..11916287,2	K562	blood:
7	chr6:11700330..11700838-chr6:11912516..11913089,2	MCF-7	breast:
8	chr6:11911731..11914610-chr6:11928299..11930986,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16872077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872098	0.85[ASN][1000 genomes]
rs17533974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs61128649	0.98[ASN][1000 genomes]
rs6901986	0.98[ASN][1000 genomes]
rs6905403	0.82[ASN][1000 genomes]
rs6919025	0.98[ASN][1000 genomes]
rs6928723	1.00[JPT][hapmap]
rs7775818	1.00[JPT][hapmap]
rs9296237	1.00[JPT][hapmap]
rs9380630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9380639	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9394442	1.00[JPT][hapmap]
rs9394473	1.00[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11910600-11918000	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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