Variant report

Variant	rs6928773
Chromosome Location	chr6:28375210-28375211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27836090..27837594-chr6:28374724..28377447,2	K562	blood:
2	chr6:28373602..28375467-chr6:28584083..28586880,2	K562	blood:
3	chr6:28372326..28375748-chr6:28455628..28458983,4	K562	blood:
4	chr6:28373595..28375831-chr6:28378815..28380474,2	K562	blood:
5	chr6:28373846..28375488-chr6:28394522..28397398,2	K562	blood:
6	chr6:28364231..28371937-chr6:28372195..28378158,17	K562	blood:
7	chr6:28192813..28194451-chr6:28373650..28375575,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction
ENSG00000137185	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1005127	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1054372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1124131	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11751693	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11752496	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11752919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs11754208	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755942	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11756111	0.82[ASW][hapmap]
rs11760133	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12697938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13190937	0.83[ASW][hapmap]
rs13201726	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13201753	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs13207208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[ASN][1000 genomes]
rs13210866	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13215476	0.85[ASN][1000 genomes]
rs13215804	0.83[ASW][hapmap]
rs1339898	0.80[EUR][1000 genomes]
rs13437294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1361385	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1416918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1558205	0.96[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1591913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16894021	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16894060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16894095	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16894108	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997660	0.83[CEU][hapmap]
rs2027361	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2071965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs213228	0.91[CEU][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs2531804	0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs28360638	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34513104	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34924864	0.82[EUR][1000 genomes]
rs35191424	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35560946	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35599905	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36018474	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3734563	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3800328	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4254981	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4357130	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4580862	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4642462	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67211468	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6899389	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6899603	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6907950	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6908137	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6917130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6922169	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922374	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922429	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929825	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6939966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs707907	0.83[CEU][hapmap]
rs740621	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs740622	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7451726	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7740351	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7749736	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7759191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7764722	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7764737	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7773051	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7775132	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs853683	0.83[CEU][hapmap]
rs853690	0.83[CEU][hapmap]
rs853693	0.83[CEU][hapmap]
rs9461455	0.82[EUR][1000 genomes]
rs9461456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9461458	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9461459	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468333	0.83[CEU][hapmap]
rs9468354	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468360	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468361	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468365	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468366	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468367	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468370	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs6928773	ZSCAN31	cis	lung	GTEx
rs6928773	ZNF192	cis	cerebellum	SCAN
rs6928773	PGBD1	cis	lymphoblastoid	seeQTL
rs6928773	AL022393.7	cis	Muscle Skeletal	GTEx
rs6928773	ZSCAN23	cis	cerebellum	SCAN
rs6928773	ZSCAN23	cis	parietal	SCAN
rs6928773	ZNF187	cis	cerebellum	SCAN
rs6928773	ZKSCAN3	cis	parietal	SCAN
rs6928773	ZKSCAN3	cis	cerebellum	SCAN
rs6928773	AL022393.7	cis	Heart Left Ventricle	GTEx
rs6928773	ZSCAN31	cis	Thyroid	GTEx
rs6928773	RP5-874C20.3	cis	Esophagus Muscularis	GTEx
rs6928773	RP5-874C20.3	cis	Thyroid	GTEx
rs6928773	ZNF323	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28374000-28377200	Enhancers	K562	blood

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