Variant report

Variant	rs7451726
Chromosome Location	chr6:28382494-28382495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28369764..28371489-chr6:28380154..28383821,4	K562	blood:
2	chr6:28365464..28369045-chr6:28381351..28384382,6	K562	blood:
3	chr6:28379842..28382776-chr6:28383800..28386316,2	K562	blood:
4	chr6:28380846..28382983-chr6:28391973..28394917,2	K562	blood:
5	chr6:28365314..28368724-chr6:28382074..28385198,3	K562	blood:
6	chr6:28380471..28382537-chr6:28386259..28388038,2	K562	blood:
7	chr6:28376587..28378827-chr6:28380769..28382729,2	K562	blood:

Variant related genes	Relation type
ENSG00000251877	Chromatin interaction
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1005127	0.87[ASN][1000 genomes]
rs1054372	0.84[ASN][1000 genomes]
rs1124131	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11751693	0.83[ASN][1000 genomes]
rs11752496	0.84[ASN][1000 genomes]
rs11752919	0.82[ASN][1000 genomes]
rs11754208	0.84[ASN][1000 genomes]
rs11755942	0.86[ASN][1000 genomes]
rs11760133	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12697938	0.84[ASN][1000 genomes]
rs13201726	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13207208	0.82[ASN][1000 genomes]
rs13210866	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13215476	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13437294	0.84[ASN][1000 genomes]
rs1361385	0.84[ASN][1000 genomes]
rs1416918	0.84[ASN][1000 genomes]
rs1591913	0.84[ASN][1000 genomes]
rs16894021	0.83[ASN][1000 genomes]
rs16894060	0.84[ASN][1000 genomes]
rs16894095	0.82[ASN][1000 genomes]
rs16894108	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2027361	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2041230	0.84[ASN][1000 genomes]
rs2071965	0.82[ASN][1000 genomes]
rs28360638	0.84[ASN][1000 genomes]
rs34513104	0.84[ASN][1000 genomes]
rs35191424	0.84[ASN][1000 genomes]
rs35560946	0.82[ASN][1000 genomes]
rs35599905	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36018474	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3734563	0.84[ASN][1000 genomes]
rs3800328	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4254981	0.86[ASN][1000 genomes]
rs4357130	0.87[ASN][1000 genomes]
rs4580862	0.87[ASN][1000 genomes]
rs4642462	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs67211468	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6899389	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6899603	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6907950	0.85[ASN][1000 genomes]
rs6908137	0.86[ASN][1000 genomes]
rs6917130	0.82[ASN][1000 genomes]
rs6922169	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6922374	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6922429	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6928773	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6929825	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs740621	0.82[ASN][1000 genomes]
rs740622	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7740351	0.82[ASN][1000 genomes]
rs7749736	0.84[ASN][1000 genomes]
rs7759191	0.84[ASN][1000 genomes]
rs7764722	0.84[ASN][1000 genomes]
rs7764737	0.84[ASN][1000 genomes]
rs7773051	0.84[ASN][1000 genomes]
rs7775132	0.84[ASN][1000 genomes]
rs9461456	0.84[ASN][1000 genomes]
rs9461458	0.84[ASN][1000 genomes]
rs9461459	0.84[ASN][1000 genomes]
rs9468354	0.84[ASN][1000 genomes]
rs9468355	0.84[ASN][1000 genomes]
rs9468357	0.84[ASN][1000 genomes]
rs9468360	0.82[ASN][1000 genomes]
rs9468361	0.84[ASN][1000 genomes]
rs9468365	0.84[ASN][1000 genomes]
rs9468366	0.85[ASN][1000 genomes]
rs9468367	0.84[ASN][1000 genomes]
rs9468368	0.84[ASN][1000 genomes]
rs9468370	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7451726	ZSCAN31	cis	Thyroid	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28377000-28386600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:28377600-28390200	Weak transcription	Fetal Lung	lung
4	chr6:28379400-28389200	Weak transcription	HSMM	muscle
5	chr6:28380800-28390600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:28381400-28390000	Weak transcription	Fetal Brain Female	brain

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