Variant report

Variant	rs6931334
Chromosome Location	chr6:166653792-166653793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10946142	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs12524797	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4489135	0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4710030	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs4710031	0.81[ASN][1000 genomes]
rs6909545	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs932592	0.88[ASN][1000 genomes]
rs9348099	0.89[ASN][1000 genomes]
rs9348102	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs9348105	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs9356450	0.88[ASN][1000 genomes]
rs9356457	0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs9364836	0.83[ASN][1000 genomes]
rs9365974	0.86[CHB][hapmap];0.88[CHD][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166650600-166654600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:166650600-166657600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:166651200-166654400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:166651400-166654000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:166651400-166657600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:166651600-166654400	Weak transcription	Fetal Thymus	thymus
7	chr6:166651800-166655000	Weak transcription	Thymus	Thymus
8	chr6:166651800-166655000	Weak transcription	Dnd41	blood
9	chr6:166652600-166653800	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links