Variant report

Variant	rs932592
Chromosome Location	chr6:166657233-166657234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10946142	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524797	0.89[ASN][1000 genomes]
rs4489135	0.85[ASN][1000 genomes]
rs4710030	0.94[ASN][1000 genomes]
rs4710031	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6909545	0.90[ASN][1000 genomes]
rs6931334	0.88[ASN][1000 genomes]
rs9348099	0.90[ASN][1000 genomes]
rs9348102	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348105	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9356450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9356457	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9364836	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9365974	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166650600-166657600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:166651400-166657600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:166654400-166659000	Enhancers	Fetal Thymus	thymus
4	chr6:166655200-166666400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:166655800-166657600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:166656200-166657600	Enhancers	Primary T cells from cord blood	blood
7	chr6:166656400-166657600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:166656600-166657400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:166656600-166657600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:166656800-166657800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:166656800-166658000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:166657000-166657400	Enhancers	GM12878-XiMat	blood
13	chr6:166657000-166657600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:166657200-166657400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:166657200-166657600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:166657200-166657600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:166657200-166657800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:166657200-166658600	Flanking Active TSS	Dnd41	blood
19	chr6:166657200-166658800	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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