Variant report

Variant	rs9348099
Chromosome Location	chr6:166650171-166650172
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10946142	0.86[ASN][1000 genomes]
rs12524797	0.92[ASN][1000 genomes]
rs4489135	0.90[ASN][1000 genomes]
rs4710030	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4710031	0.83[ASN][1000 genomes]
rs6909545	0.90[ASN][1000 genomes]
rs6931334	0.89[ASN][1000 genomes]
rs932592	0.90[ASN][1000 genomes]
rs9348102	0.91[ASN][1000 genomes]
rs9348105	0.83[ASN][1000 genomes]
rs9355562	0.82[ASN][1000 genomes]
rs9356450	0.91[ASN][1000 genomes]
rs9356457	0.84[ASN][1000 genomes]
rs9364836	0.86[ASN][1000 genomes]
rs9365974	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166646400-166650200	Weak transcription	Dnd41	blood
2	chr6:166646800-166650400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:166648800-166650800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:166648800-166651600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:166649200-166650400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:166649200-166651400	Weak transcription	Primary T cells from cord blood	blood
7	chr6:166649400-166650200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:166649400-166650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:166649400-166650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:166649800-166650400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:166649800-166650600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:166649800-166650800	Enhancers	Primary B cells from cord blood	blood
13	chr6:166650000-166650200	Bivalent Enhancer	Placenta	Placenta
14	chr6:166650000-166650600	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:166650000-166650800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr6:166650000-166651600	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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