Variant report

Variant	rs6931358
Chromosome Location	chr6:82531782-82531783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1000276	0.84[CHB][hapmap]
rs1931623	0.94[CEU][hapmap];0.84[CHB][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1981090	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35948269	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs733413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359503	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359505	0.84[CEU][hapmap]
rs9361861	0.94[CEU][hapmap];0.83[CHB][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82523800-82532600	Enhancers	Stomach Mucosa	stomach
2	chr6:82528000-82532000	Enhancers	Primary B cells from cord blood	blood
3	chr6:82528000-82532400	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:82529000-82532600	Enhancers	HepG2	liver
5	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
6	chr6:82529600-82532200	Weak transcription	Gastric	stomach
7	chr6:82530600-82532000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:82530600-82532600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:82530800-82531800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:82531000-82532400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:82531200-82531800	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:82531200-82531800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:82531600-82532000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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