Variant report

Variant	rs1000276
Chromosome Location	chr6:82488112-82488113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12524158	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1931623	0.81[CHB][hapmap]
rs194611	0.87[CEU][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194615	0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1981090	0.90[CHB][hapmap]
rs6924759	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6928409	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6929407	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941969	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71558975	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9344221	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9353027	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82483000-82497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82484400-82488400	Enhancers	HepG2	liver
3	chr6:82486800-82488400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:82487400-82488200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82487400-82488400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82487600-82488200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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