Variant report

Variant	rs6928409
Chromosome Location	chr6:82483239-82483240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000276	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12524158	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931623	0.90[CHB][hapmap]
rs194611	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194615	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194616	0.81[ASN][1000 genomes]
rs6924759	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929407	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941969	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558975	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344221	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9353027	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359505	0.84[CHB][hapmap]
rs9361861	0.89[CHB][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82477400-82483600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:82477600-82485400	Weak transcription	Placenta	Placenta
4	chr6:82480400-82485800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:82481600-82484000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:82481800-82483400	Weak transcription	HepG2	liver
7	chr6:82482000-82484600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:82482200-82483400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:82482800-82484200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:82483000-82483400	Weak transcription	Stomach Mucosa	stomach
11	chr6:82483000-82484800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr6:82483000-82487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:82483000-82487400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:82483000-82497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:82483200-82483600	Weak transcription	Hela-S3	cervix
16	chr6:82483200-82485600	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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