Variant report

Variant	rs12524158
Chromosome Location	chr6:82476465-82476466
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:82457933..82460179-chr6:82475399..82477711,2	MCF-7	breast:
2	chr6:82474728..82479449-chr6:82479643..82485217,7	MCF-7	breast:
3	chr6:82474912..82477439-chr6:82515364..82517763,2	MCF-7	breast:
4	chr6:82476333..82478960-chr6:82529549..82531643,2	MCF-7	breast:
5	chr6:82475840..82480204-chr6:82524356..82527900,4	MCF-7	breast:
6	chr6:82476464..82477240-chr6:82525825..82526638,3	MCF-7	breast:
7	chr6:82475862..82476705-chr6:82508606..82509288,2	MCF-7	breast:
8	chr6:82476027..82477582-chr6:82522556..82524327,2	MCF-7	breast:
9	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:
10	chr6:82476367..82477352-chr6:82508887..82509707,2	MCF-7	breast:
11	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:
12	chr6:82448675..82451514-chr6:82474859..82477314,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224995	Chromatin interaction
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1000276	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1931623	0.94[CHB][hapmap]
rs194611	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194615	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194616	0.81[ASN][1000 genomes]
rs1981090	0.83[CHB][hapmap]
rs6924759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928409	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929407	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558975	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344221	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9353027	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359505	0.89[CHB][hapmap]
rs9361861	0.94[CHB][hapmap]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:82467400-82477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:82471000-82476600	Weak transcription	Fetal Stomach	stomach
5	chr6:82473800-82480600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:82474600-82476600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:82475600-82477400	Enhancers	Fetal Intestine Small	intestine
9	chr6:82475600-82477400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:82475600-82477600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:82475600-82477800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:82475600-82481200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82475800-82476600	Flanking Active TSS	Dnd41	blood
14	chr6:82475800-82476600	Flanking Active TSS	NHLF	lung
15	chr6:82475800-82476800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:82475800-82477000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr6:82475800-82477200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:82475800-82477200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:82475800-82477200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:82475800-82477200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:82475800-82477400	Enhancers	Fetal Intestine Large	intestine
22	chr6:82475800-82477400	Enhancers	Fetal Lung	lung
23	chr6:82475800-82477400	Bivalent Enhancer	HUVEC	blood vessel
24	chr6:82475800-82477600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:82475800-82477600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:82475800-82477600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:82475800-82477600	Enhancers	Small Intestine	intestine
28	chr6:82475800-82478200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:82476000-82476800	Enhancers	Liver	Liver
30	chr6:82476000-82477000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:82476000-82477000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:82476000-82477200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:82476000-82477200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:82476000-82477200	Enhancers	Fetal Kidney	kidney
35	chr6:82476000-82477200	Enhancers	Ovary	ovary
36	chr6:82476000-82477400	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr6:82476000-82477400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:82476000-82477600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:82476000-82477600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:82476000-82477600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:82476000-82477600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:82476000-82477600	Enhancers	Adipose Nuclei	Adipose
43	chr6:82476000-82477600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:82476000-82477600	Enhancers	Stomach Mucosa	stomach
45	chr6:82476000-82477600	Flanking Active TSS	Hela-S3	cervix
46	chr6:82476000-82477600	Enhancers	HSMM	muscle
47	chr6:82476000-82477600	Flanking Active TSS	Osteobl	bone
48	chr6:82476000-82477800	Enhancers	HMEC	breast
49	chr6:82476000-82478400	Enhancers	HSMMtube	muscle
50	chr6:82476200-82476600	Enhancers	Stomach Smooth Muscle	stomach

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