Variant report

Variant	rs6924759
Chromosome Location	chr6:82472556-82472557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:82470431-82473277	SK-N-SH	brain:	n/a	chr6:82471093-82471102 chr6:82471093-82471103 chr6:82472838-82472849 chr6:82471094-82471101 chr6:82471092-82471103 chr6:82471094-82471103 chr6:82471092-82471104 chr6:82471093-82471103 chr6:82470484-82470496
2	EP300	chr6:82470455-82472858	SK-N-SH	brain:	n/a	chr6:82470823-82470837 chr6:82472760-82472774 chr6:82471094-82471103

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82462433..82465260-chr6:82471408..82474584,3	K562	blood:
2	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219702	TF binding region
ENSG00000206886	TF binding region
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1000276	1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12524158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931623	0.94[CHB][hapmap]
rs194611	0.87[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194615	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194616	0.81[ASN][1000 genomes]
rs1981090	0.83[CHB][hapmap]
rs6928409	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929407	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71558975	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344221	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9353027	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9359504	0.85[CEU][hapmap]
rs9359505	0.89[CHB][hapmap]
rs9361861	0.94[CHB][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:82464200-82472800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:82464400-82475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:82467200-82474000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:82467400-82477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:82467800-82476200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:82468000-82476000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:82469200-82472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:82469200-82472600	Enhancers	HMEC	breast
12	chr6:82469200-82473200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82469600-82472600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:82469600-82472800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:82469600-82472800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:82469600-82473200	Enhancers	Osteobl	bone
17	chr6:82469800-82473400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:82469800-82475600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:82469800-82476200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:82470000-82476200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:82470400-82473200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:82470400-82473200	Enhancers	Hela-S3	cervix
23	chr6:82470600-82474200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:82470600-82474200	Enhancers	NHDF-Ad	bronchial
25	chr6:82470800-82473200	Enhancers	NHLF	lung
26	chr6:82470800-82475800	Weak transcription	Fetal Intestine Large	intestine
27	chr6:82470800-82475800	Weak transcription	Small Intestine	intestine
28	chr6:82471000-82472800	Weak transcription	HepG2	liver
29	chr6:82471000-82476000	Weak transcription	Stomach Mucosa	stomach
30	chr6:82471000-82476600	Weak transcription	Fetal Stomach	stomach
31	chr6:82471800-82473200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr6:82471800-82473400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:82471800-82475600	Weak transcription	A549	lung
34	chr6:82471800-82476000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:82471800-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:82472000-82473000	Enhancers	Colon Smooth Muscle	Colon
37	chr6:82472000-82473200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:82472000-82473200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:82472000-82473400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:82472000-82474000	Enhancers	Placenta	Placenta
41	chr6:82472000-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:82472000-82476200	Enhancers	Primary hematopoietic stem cells	blood
43	chr6:82472200-82473000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:82472200-82476000	Weak transcription	HSMM	muscle
45	chr6:82472200-82476200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:82472200-82476400	Weak transcription	NHEK	skin
47	chr6:82472400-82472800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:82472400-82475600	Weak transcription	NH-A	brain
49	chr6:82472400-82476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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