Variant report

Variant	rs194615
Chromosome Location	chr6:82496434-82496435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82496401..82499366-chr6:82532324..82534807,2	MCF-7	breast:
2	chr6:82495383..82498182-chr6:82525424..82528036,2	MCF-7	breast:
3	chr6:82459273..82465478-chr6:82493760..82501805,11	MCF-7	breast:
4	chr6:82476634..82480378-chr6:82495260..82498447,4	MCF-7	breast:
5	chr6:82495087..82497496-chr6:83073389..83075037,2	MCF-7	breast:
6	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146242	Chromatin interaction
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000276	0.87[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12524158	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931623	0.94[CHB][hapmap]
rs194611	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981090	0.83[CHB][hapmap]
rs6924759	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6928409	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929407	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941969	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71558975	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344221	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9353027	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9359505	0.89[CHB][hapmap]
rs9361861	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82483000-82497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82492000-82498400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82494400-82499000	Enhancers	Stomach Mucosa	stomach
4	chr6:82494600-82499000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82494800-82498800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:82495200-82497600	Weak transcription	HMEC	breast
7	chr6:82495800-82497000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:82495800-82497000	Enhancers	Hela-S3	cervix
9	chr6:82495800-82497600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:82495800-82497800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:82496000-82496600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:82496000-82496800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:82496000-82497600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:82496000-82500600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:82496200-82496600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:82496200-82496800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:82496200-82496800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:82496200-82496800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:82496200-82497200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:82496200-82497600	Enhancers	NHDF-Ad	bronchial
21	chr6:82496200-82498400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:82496200-82498400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:82496200-82500000	Enhancers	HepG2	liver
24	chr6:82496400-82496600	Enhancers	Dnd41	blood
25	chr6:82496400-82498400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:82496400-82498600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:82496400-82498600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:82496400-82499000	Enhancers	Muscle Satellite Cultured Cells	--

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