Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82476333..82478960-chr6:82529549..82531643,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000276	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs12524158	0.84[CHB][hapmap]
rs1931623	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs194615	0.83[CHB][hapmap]
rs1981090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35948269	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924759	0.83[CHB][hapmap]
rs6931358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941969	0.84[CHB][hapmap]
rs9359503	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359505	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs9361861	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82522800-82531400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:82523800-82532600	Enhancers	Stomach Mucosa	stomach
3	chr6:82528000-82532000	Enhancers	Primary B cells from cord blood	blood
4	chr6:82528000-82532400	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:82529000-82532600	Enhancers	HepG2	liver
6	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
7	chr6:82529600-82532200	Weak transcription	Gastric	stomach
8	chr6:82530200-82531000	Flanking Active TSS	Liver	Liver
9	chr6:82530200-82531200	Enhancers	Fetal Intestine Large	intestine
10	chr6:82530200-82531200	Enhancers	Ovary	ovary
11	chr6:82530200-82531200	Enhancers	Small Intestine	intestine
12	chr6:82530400-82531000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:82530600-82531000	Active TSS	Duodenum Mucosa	Duodenum
14	chr6:82530600-82531000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr6:82530600-82531000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:82530600-82531200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:82530600-82532000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:82530600-82532600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:82530800-82531000	Enhancers	Fetal Lung	lung
20	chr6:82530800-82531800	Weak transcription	Fetal Intestine Small	intestine

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