Variant report

Variant	rs6932152
Chromosome Location	chr6:57328607-57328608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12193422	0.81[CEU][hapmap]
rs12663637	0.84[CEU][hapmap]
rs1358815	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1407092	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap]
rs1570071	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1570072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17842594	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1853495	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2024989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2067974	1.00[CEU][hapmap]
rs2068287	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap]
rs2079934	0.81[CEU][hapmap]
rs2146926	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2397241	0.81[CEU][hapmap]
rs2397476	0.88[ASW][hapmap];0.83[LWK][hapmap]
rs2397517	0.83[LWK][hapmap]
rs2397560	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2894917	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3805802	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3828718	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3828719	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3857619	0.88[CEU][hapmap]
rs4110471	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4470851	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4481432	0.85[CEU][hapmap]
rs4715714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4715715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap]
rs4715824	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5003525	0.82[CEU][hapmap]
rs5023712	0.88[CEU][hapmap]
rs581228	0.86[CEU][hapmap]
rs6459229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6899346	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6906498	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap]
rs6910706	0.88[CEU][hapmap]
rs6929271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6937237	0.80[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs7739595	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7754721	0.81[CEU][hapmap]
rs7764608	1.00[CEU][hapmap]
rs7764640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7776311	0.88[ASW][hapmap];0.87[CEU][hapmap];0.88[LWK][hapmap]
rs911204	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs911205	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs927194	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9296878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9296903	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367759	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9370600	0.84[CEU][hapmap]
rs9370601	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9382734	1.00[CEU][hapmap]
rs9382808	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9396353	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9464528	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9475977	0.94[CEU][hapmap]
rs9476073	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9476176	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022055	chr6:57192993-57353692	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1015853	chr6:57205882-57528899	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538231	chr6:57205882-57528899	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1026876	chr6:57205882-57911812	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538232	chr6:57205882-57911812	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1017144	chr6:57205882-58055059	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
9	nsv538233	chr6:57205882-58055059	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
10	nsv931006	chr6:57205883-58060394	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
11	nsv603191	chr6:57205920-57381883	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
12	esv2453782	chr6:57206998-57575589	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1024888	chr6:57208043-57541463	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1020263	chr6:57208043-57562028	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
15	nsv538234	chr6:57208043-57562028	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1025413	chr6:57208043-57617947	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
17	nsv538235	chr6:57208043-57617947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1024375	chr6:57208043-58002217	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
19	nsv603192	chr6:57218436-57381883	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
20	nsv603193	chr6:57218436-58075480	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
21	nsv470820	chr6:57224119-58075480	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
22	nsv885914	chr6:57224854-57364314	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1027292	chr6:57226182-57560129	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
24	nsv1023626	chr6:57226182-57617208	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
25	nsv1031558	chr6:57226182-57631396	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1024902	chr6:57226182-57768689	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
27	nsv1030993	chr6:57236918-57631396	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
28	nsv885915	chr6:57249977-57422878	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
29	nsv1025887	chr6:57299012-57677872	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	nsv515916	chr6:57299092-58075480	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
31	nsv969404	chr6:57301274-57383601	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv885916	chr6:57308960-57381883	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv885917	chr6:57308960-57395170	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
34	nsv1020177	chr6:57308983-57631396	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
35	nsv1022933	chr6:57308983-57751479	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
36	nsv1032663	chr6:57309647-57631396	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
37	nsv885918	chr6:57313251-57395170	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
38	nsv1031522	chr6:57323779-57617208	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57326400-57330200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:57326400-57333600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:57327000-57329400	ZNF genes & repeats	HepG2	liver
4	chr6:57327200-57329000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:57327400-57329000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:57328000-57328800	Weak transcription	Fetal Kidney	kidney
7	chr6:57328000-57329000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:57328400-57329000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:57328400-57329000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:57328400-57329000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:57328400-57329000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:57328400-57329000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:57328400-57329000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:57328400-57329000	Enhancers	NHDF-Ad	bronchial
15	chr6:57328400-57329200	Enhancers	HSMM	muscle
16	chr6:57328400-57329200	Enhancers	HSMMtube	muscle
17	chr6:57328600-57328800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:57328600-57329000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:57328600-57329000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:57328600-57329000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:57328600-57329000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:57328600-57329000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:57328600-57329000	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:57328600-57329000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:57328600-57329000	Enhancers	NH-A	brain
26	chr6:57328600-57329000	Flanking Active TSS	Osteobl	bone
27	chr6:57328600-57329400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:57328600-57329400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:57328600-57333600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:57328600-57334600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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