Variant report

Variant	rs6932659
Chromosome Location	chr6:163740523-163740524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163729760..163732219-chr6:163738312..163741230,2	MCF-7	breast:
2	chr6:163733010..163737483-chr6:163739253..163742400,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484793	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894793	1.00[ASN][1000 genomes]
rs41476147	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56157187	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56713737	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919533	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927767	0.88[EUR][1000 genomes]
rs73603763	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603766	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603771	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762240	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163731600-163742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
3	chr6:163734000-163741600	Weak transcription	A549	lung
4	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:163736400-163741200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:163736600-163741200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:163737200-163744800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:163739600-163741000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:163740000-163741000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:163740000-163741000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:163740000-163741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:163740000-163743000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:163740000-163744400	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:163740000-163745600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:163740200-163740600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:163740200-163741000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:163740200-163741200	Weak transcription	Right Atrium	heart
18	chr6:163740200-163742400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:163740200-163746000	Weak transcription	Psoas Muscle	Psoas
20	chr6:163740200-163746200	Weak transcription	Lung	lung
21	chr6:163740400-163740800	Weak transcription	Adipose Nuclei	Adipose
22	chr6:163740400-163740800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:163740400-163740800	Weak transcription	Brain Substantia Nigra	brain
24	chr6:163740400-163740800	Weak transcription	Fetal Heart	heart
25	chr6:163740400-163742400	Weak transcription	Left Ventricle	heart
26	chr6:163740400-163742400	Weak transcription	Right Ventricle	heart

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