Variant report

Variant	rs73603766
Chromosome Location	chr6:163741465-163741466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:163733010..163737483-chr6:163739253..163742400,4	MCF-7	breast:
2	chr6:163736077..163738782-chr6:163740671..163742976,2	K562	blood:
3	chr6:163740696..163743616-chr6:163834506..163837495,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115954
2	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115955
3	lnc-AL078585.1-11	chr6:163741433-163741591	NONHSAT115956

No data

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894793	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41476147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56157187	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56713737	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927767	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932659	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73603771	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762240	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163731600-163742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
3	chr6:163734000-163741600	Weak transcription	A549	lung
4	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:163737200-163744800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:163740000-163743000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:163740000-163744400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:163740000-163745600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:163740200-163742400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:163740200-163746000	Weak transcription	Psoas Muscle	Psoas
11	chr6:163740200-163746200	Weak transcription	Lung	lung
12	chr6:163740400-163742400	Weak transcription	Left Ventricle	heart
13	chr6:163740400-163742400	Weak transcription	Right Ventricle	heart
14	chr6:163740600-163742600	Enhancers	Brain Angular Gyrus	brain
15	chr6:163741000-163741800	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr6:163741000-163742000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr6:163741000-163743000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:163741000-163743600	Enhancers	Liver	Liver
19	chr6:163741000-163744600	Enhancers	Brain Anterior Caudate	brain
20	chr6:163741200-163741800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:163741200-163741800	Enhancers	Colon Smooth Muscle	Colon
22	chr6:163741200-163742000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:163741200-163742800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:163741200-163743000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:163741400-163741600	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr6:163741400-163742000	Flanking Active TSS	Fetal Heart	heart
27	chr6:163741400-163742400	Weak transcription	Pancreas	Pancrea
28	chr6:163741400-163742400	Weak transcription	Right Atrium	heart
29	chr6:163741400-163744400	Enhancers	Brain Hippocampus Middle	brain
30	chr6:163741400-163744400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:163741400-163746600	Enhancers	Adipose Nuclei	Adipose

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