Variant report

Variant	rs6937541
Chromosome Location	chr6:5878720-5878721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13191006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34888838	0.80[AFR][1000 genomes]
rs56020646	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6920981	0.91[EUR][1000 genomes]
rs71557588	0.81[AMR][1000 genomes]
rs751176	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6937541	FAM136B	cis	cerebellum	SCAN
rs6937541	TIE1	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5877600-5878800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:5877600-5879000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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