Variant report

Variant	rs34888838
Chromosome Location	chr6:5852972-5852973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13191006	0.80[AFR][1000 genomes]
rs2011957	0.83[AMR][1000 genomes]
rs34213405	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6597168	0.81[EUR][1000 genomes]
rs6937541	0.80[AFR][1000 genomes]
rs6939603	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71557588	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs751176	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502362	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9504544	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3419533	chr6:5852882-5853328	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5852000-5855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:5852200-5856000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:5852200-5856000	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:5852200-5856200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:5852200-5856400	Weak transcription	Fetal Brain Female	brain
6	chr6:5852200-5865600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:5852400-5853000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:5852400-5856000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:5852400-5856200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:5852400-5865400	Weak transcription	Spleen	Spleen
11	chr6:5852600-5853800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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