Variant report
| Variant | rs34213405 |
|---|---|
| Chromosome Location | chr6:5847251-5847252 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MEF2A | chr6:5847129-5847486 | GM12878 | blood: | n/a | chr6:5847349-5847360 chr6:5847347-5847362 chr6:5847347-5847364 |
| 2 | BATF | chr6:5847115-5847430 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233064 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13195249 | 0.88[EUR][1000 genomes] |
| rs13201125 | 0.89[EUR][1000 genomes] |
| rs13216719 | 0.88[EUR][1000 genomes] |
| rs1407794 | 0.87[EUR][1000 genomes] |
| rs1815269 | 0.88[EUR][1000 genomes] |
| rs1815270 | 0.88[EUR][1000 genomes] |
| rs1830684 | 0.86[EUR][1000 genomes] |
| rs2011957 | 0.92[EUR][1000 genomes] |
| rs34888838 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs34907770 | 0.89[EUR][1000 genomes] |
| rs35220069 | 0.88[EUR][1000 genomes] |
| rs35481040 | 0.86[EUR][1000 genomes] |
| rs6939603 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs71557586 | 0.88[EUR][1000 genomes] |
| rs7740822 | 0.87[EUR][1000 genomes] |
| rs9502362 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9504534 | 0.85[EUR][1000 genomes] |
| rs9504536 | 0.87[EUR][1000 genomes] |
| rs9504537 | 0.86[EUR][1000 genomes] |
| rs9504544 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5183 | chr6:5821731-5866796 | Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:5847000-5847600 | Flanking Active TSS | GM12878-XiMat | blood |
