Variant report

Variant	rs13201125
Chromosome Location	chr6:5825437-5825438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13195249	0.99[EUR][1000 genomes]
rs13216719	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1407794	0.96[EUR][1000 genomes]
rs1815269	0.93[EUR][1000 genomes]
rs1815270	0.93[EUR][1000 genomes]
rs1830684	0.95[EUR][1000 genomes]
rs2011957	0.97[EUR][1000 genomes]
rs34213405	0.89[EUR][1000 genomes]
rs34907770	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35220069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35481040	0.95[EUR][1000 genomes]
rs6939603	0.90[EUR][1000 genomes]
rs71557586	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7740822	0.96[EUR][1000 genomes]
rs9504534	0.96[EUR][1000 genomes]
rs9504536	0.96[EUR][1000 genomes]
rs9504537	0.95[EUR][1000 genomes]
rs9504544	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5817200-5828000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:5823600-5825600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:5823600-5825600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:5823800-5825600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr6:5824200-5825600	Enhancers	Fetal Thymus	thymus
6	chr6:5825000-5827600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:5825000-5828800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:5825000-5829000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:5825000-5829400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:5825000-5832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:5825200-5828800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:5825400-5827200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:5825400-5830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:5825400-5830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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