Variant report

Variant	rs6939603
Chromosome Location	chr6:5847056-5847057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13195249	0.89[EUR][1000 genomes]
rs13201125	0.90[EUR][1000 genomes]
rs13216719	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1407794	0.88[EUR][1000 genomes]
rs1815269	0.89[EUR][1000 genomes]
rs1815270	0.89[EUR][1000 genomes]
rs1830684	0.87[EUR][1000 genomes]
rs2011957	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34213405	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34888838	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34907770	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35220069	0.89[EUR][1000 genomes]
rs35481040	0.87[EUR][1000 genomes]
rs71557586	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71557588	0.80[EUR][1000 genomes]
rs751176	0.80[EUR][1000 genomes]
rs7740822	0.88[EUR][1000 genomes]
rs9378984	1.00[JPT][hapmap]
rs9392090	1.00[JPT][hapmap]
rs9502362	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9504534	0.86[EUR][1000 genomes]
rs9504536	0.88[EUR][1000 genomes]
rs9504537	0.87[EUR][1000 genomes]
rs9504544	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5847000-5847600	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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