Variant report

Variant	rs9504544
Chromosome Location	chr6:5833939-5833940
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13195249	0.91[EUR][1000 genomes]
rs13201125	0.92[EUR][1000 genomes]
rs13216719	0.91[EUR][1000 genomes]
rs1407794	0.92[EUR][1000 genomes]
rs1815269	0.93[EUR][1000 genomes]
rs1815270	0.93[EUR][1000 genomes]
rs1830684	0.91[EUR][1000 genomes]
rs2011957	0.95[EUR][1000 genomes]
rs34213405	0.95[EUR][1000 genomes]
rs34888838	0.81[EUR][1000 genomes]
rs34907770	0.92[EUR][1000 genomes]
rs35220069	0.91[EUR][1000 genomes]
rs35481040	0.91[EUR][1000 genomes]
rs6904513	0.86[ASN][1000 genomes]
rs6923989	0.92[ASN][1000 genomes]
rs6939603	0.96[EUR][1000 genomes]
rs71557586	0.91[EUR][1000 genomes]
rs71557588	0.80[EUR][1000 genomes]
rs751176	0.80[EUR][1000 genomes]
rs7740822	0.92[EUR][1000 genomes]
rs9502353	0.92[ASN][1000 genomes]
rs9502355	0.92[ASN][1000 genomes]
rs9502362	0.82[EUR][1000 genomes]
rs9504534	0.90[EUR][1000 genomes]
rs9504536	0.92[EUR][1000 genomes]
rs9504537	0.91[EUR][1000 genomes]
rs9504547	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv970075	chr6:5829270-5841514	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus
2	chr6:5829200-5835000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:5830600-5834000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:5830600-5834200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:5830800-5834000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:5831000-5834000	Enhancers	Primary B cells from cord blood	blood
7	chr6:5831400-5834000	Enhancers	Lung	lung
8	chr6:5831600-5834600	Enhancers	Thymus	Thymus
9	chr6:5832000-5834000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:5832200-5834000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:5832200-5834200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:5832200-5834200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:5832200-5835000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:5832200-5835000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:5832200-5840400	Weak transcription	Right Atrium	heart
16	chr6:5832400-5834400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:5832400-5834800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:5833200-5834200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr6:5833200-5835000	Enhancers	Primary T cells from cord blood	blood
20	chr6:5833400-5834200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:5833400-5834200	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:5833600-5834200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:5833800-5834000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:5833800-5834000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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