Variant report

Variant	rs9504536
Chromosome Location	chr6:5827995-5827996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13195249	0.95[EUR][1000 genomes]
rs13201125	0.96[EUR][1000 genomes]
rs13216719	0.95[EUR][1000 genomes]
rs1407794	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815269	0.97[EUR][1000 genomes]
rs1815270	0.97[EUR][1000 genomes]
rs1830684	0.99[EUR][1000 genomes]
rs2011957	0.95[EUR][1000 genomes]
rs34213405	0.87[EUR][1000 genomes]
rs34907770	0.96[EUR][1000 genomes]
rs35220069	0.95[EUR][1000 genomes]
rs35481040	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921679	1.00[ASN][1000 genomes]
rs6939603	0.88[EUR][1000 genomes]
rs71557586	0.95[EUR][1000 genomes]
rs7740822	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504530	0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs9504532	1.00[ASN][1000 genomes]
rs9504533	1.00[ASN][1000 genomes]
rs9504534	0.98[EUR][1000 genomes]
rs9504537	0.99[EUR][1000 genomes]
rs9504544	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5817200-5828000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:5825000-5828800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:5825000-5829000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:5825000-5829400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:5825000-5832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:5825200-5828800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:5825400-5830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:5825400-5830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:5825600-5828000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:5825600-5828600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:5825600-5828800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:5826600-5831600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:5827200-5829400	Enhancers	Fetal Brain Male	brain
14	chr6:5827200-5829600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:5827200-5829600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:5827400-5828200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:5827400-5828400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:5827400-5828400	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:5827400-5829000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr6:5827400-5829200	Enhancers	Fetal Brain Female	brain
21	chr6:5827400-5835000	Enhancers	Fetal Thymus	thymus
22	chr6:5827600-5828000	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr6:5827600-5828200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:5827600-5828200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:5827600-5828400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:5827600-5829400	Enhancers	Primary B cells from cord blood	blood
27	chr6:5827600-5831600	Enhancers	Primary T cells from cord blood	blood
28	chr6:5827800-5828200	Enhancers	Brain Anterior Caudate	brain
29	chr6:5827800-5828400	Enhancers	Fetal Muscle Leg	muscle
30	chr6:5827800-5828800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:5827800-5829600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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