Variant report

Variant	rs71557586
Chromosome Location	chr6:5824619-5824620
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13195249	0.98[EUR][1000 genomes]
rs13201125	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13216719	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407794	0.95[EUR][1000 genomes]
rs1815269	0.92[EUR][1000 genomes]
rs1815270	0.92[EUR][1000 genomes]
rs1830684	0.94[EUR][1000 genomes]
rs2011957	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34213405	0.88[EUR][1000 genomes]
rs34907770	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35220069	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35481040	0.96[EUR][1000 genomes]
rs6939603	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7740822	0.95[EUR][1000 genomes]
rs9504534	0.95[EUR][1000 genomes]
rs9504536	0.95[EUR][1000 genomes]
rs9504537	0.94[EUR][1000 genomes]
rs9504544	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5817200-5828000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:5823600-5825600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:5823600-5825600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:5823800-5825400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr6:5823800-5825600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:5824200-5825200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:5824200-5825400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:5824200-5825600	Enhancers	Fetal Thymus	thymus
9	chr6:5824400-5825000	Enhancers	Primary T cells from cord blood	blood
10	chr6:5824400-5825000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:5824400-5825000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:5824400-5825400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:5824600-5825000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:5824600-5825000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:5824600-5825000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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