Variant report

Variant	rs751176
Chromosome Location	chr6:5862510-5862511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13191006	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34888838	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6597168	0.87[EUR][1000 genomes]
rs6937541	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6939603	0.80[EUR][1000 genomes]
rs71557588	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9502362	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9504544	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5852200-5865600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:5852400-5865400	Weak transcription	Spleen	Spleen
3	chr6:5862400-5865400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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