Variant report

Variant rs6937688
Chromosome Location chr6:1729442-1729443
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:1695800-1731400 Weak transcription Fetal Intestine Large intestine
2 chr6:1701200-1749400 Weak transcription Colonic Mucosa Colon
3 chr6:1716000-1749200 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr6:1717600-1731600 Weak transcription Aorta Aorta
5 chr6:1718800-1731400 Weak transcription Primary hematopoietic stem cells blood
6 chr6:1721200-1731600 Weak transcription Right Atrium heart
7 chr6:1721200-1746200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr6:1721200-1748800 Weak transcription Osteobl bone
9 chr6:1721400-1730600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr6:1721400-1739400 Weak transcription Hela-S3 cervix
11 chr6:1723000-1743200 Strong transcription HepG2 liver
12 chr6:1724800-1729800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr6:1725000-1730600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr6:1725000-1737800 Weak transcription H9 Cell Line embryonic stem cell
15 chr6:1725200-1729600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr6:1725200-1730800 Weak transcription GM12878-XiMat blood
17 chr6:1725200-1733400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr6:1725400-1729600 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr6:1725400-1735600 Weak transcription Stomach Mucosa stomach
20 chr6:1725600-1729600 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr6:1726400-1730600 Weak transcription Primary B cells from cord blood blood
22 chr6:1726800-1730400 Weak transcription Primary neutrophils fromperipheralblood blood
23 chr6:1726800-1730600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr6:1726800-1730800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr6:1726800-1731600 Weak transcription Fetal Intestine Small intestine
26 chr6:1726800-1735400 Weak transcription Gastric stomach
27 chr6:1726800-1735600 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr6:1726800-1749000 Weak transcription Duodenum Mucosa Duodenum
29 chr6:1726800-1749000 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr6:1727000-1735600 Weak transcription Pancreas Pancrea
31 chr6:1727000-1737600 Weak transcription Primary T cells from cord blood blood
32 chr6:1728400-1730800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr6:1728600-1729600 Enhancers HMEC breast
34 chr6:1728600-1730800 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr6:1728600-1731600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr6:1728800-1730400 Enhancers Cortex derived primary cultured neurospheres brain
37 chr6:1729000-1731000 Enhancers HUES6 Cell Line embryonic stem cell
38 chr6:1729200-1729600 Enhancers Adipose Nuclei Adipose
39 chr6:1729200-1729600 Enhancers Esophagus oesophagus
40 chr6:1729200-1729600 Enhancers NHEK skin
41 chr6:1729200-1730000 Enhancers HUVEC blood vessel
42 chr6:1729200-1730400 Enhancers Breast Myoepithelial Primary Cells Breast
43 chr6:1729200-1730400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr6:1729200-1730400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr6:1729200-1730400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr6:1729200-1730600 Enhancers HUES48 Cell Line embryonic stem cell
47 chr6:1729200-1730800 Enhancers iPS-20b Cell Line embryonic stem cell
48 chr6:1729400-1729600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr6:1729400-1729600 Enhancers Fetal Thymus thymus
50 chr6:1729400-1729800 Enhancers Brain Germinal Matrix brain

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