Variant report

Variant	rs6939860
Chromosome Location	chr6:141912009-141912010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13204687	0.84[AMR][1000 genomes]
rs13208315	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs1415913	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17177818	0.84[AMR][1000 genomes]
rs17178941	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34551335	0.85[AMR][1000 genomes]
rs34848860	0.85[AMR][1000 genomes]
rs35117219	0.85[AMR][1000 genomes]
rs35387389	0.85[AMR][1000 genomes]
rs35589888	0.84[AMR][1000 genomes]
rs35742539	0.85[AMR][1000 genomes]
rs35888899	0.85[AMR][1000 genomes]
rs36037029	0.85[AMR][1000 genomes]
rs36050873	0.84[AMR][1000 genomes]
rs4075995	0.81[AMR][1000 genomes]
rs4623253	0.84[AMR][1000 genomes]
rs67463968	0.85[AMR][1000 genomes]
rs6904106	0.85[AMR][1000 genomes]
rs9376643	0.83[ASN][1000 genomes]
rs9496116	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1025706	chr6:141909953-142131906	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538456	chr6:141909953-142131906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1032184	chr6:141909953-142234993	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141909400-141919600	Weak transcription	NHLF	lung
2	chr6:141911600-141912400	Enhancers	Pancreatic Islets	Pancreatic Islet

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