Variant report

Variant	rs13208315
Chromosome Location	chr6:141882519-141882520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141872843..141874835-chr6:141881492..141883832,2	MCF-7	breast:
2	chr6:139692928..139695826-chr6:141882361..141885438,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10081087	0.97[EUR][1000 genomes]
rs13194017	0.83[EUR][1000 genomes]
rs13201700	0.83[EUR][1000 genomes]
rs13201721	0.83[EUR][1000 genomes]
rs13201884	0.83[EUR][1000 genomes]
rs13204687	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13205547	0.83[EUR][1000 genomes]
rs13206194	0.96[EUR][1000 genomes]
rs17177818	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17178941	0.85[AMR][1000 genomes]
rs34014030	0.83[EUR][1000 genomes]
rs34169508	0.83[EUR][1000 genomes]
rs34551335	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34848860	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34993232	0.83[EUR][1000 genomes]
rs35033152	0.83[EUR][1000 genomes]
rs35117219	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35387389	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35458980	0.83[EUR][1000 genomes]
rs35589888	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35719146	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35742539	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35807663	0.83[EUR][1000 genomes]
rs35888899	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36004278	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36037029	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36050873	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36084040	0.96[EUR][1000 genomes]
rs4075995	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4397247	0.83[EUR][1000 genomes]
rs4398761	0.83[EUR][1000 genomes]
rs4623253	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59234112	0.88[AMR][1000 genomes]
rs66521742	0.83[EUR][1000 genomes]
rs66586120	0.83[EUR][1000 genomes]
rs66870530	0.83[EUR][1000 genomes]
rs66948099	0.83[EUR][1000 genomes]
rs67210523	0.96[EUR][1000 genomes]
rs67463968	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6904106	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6909964	0.83[EUR][1000 genomes]
rs6924664	0.83[EUR][1000 genomes]
rs6939860	0.84[AMR][1000 genomes]
rs7748087	0.83[EUR][1000 genomes]
rs7749795	0.96[EUR][1000 genomes]
rs7750112	0.96[EUR][1000 genomes]
rs7756015	0.96[EUR][1000 genomes]
rs7766414	0.83[EUR][1000 genomes]
rs7775688	0.96[EUR][1000 genomes]
rs9496053	0.96[EUR][1000 genomes]
rs9496054	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9496058	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141875400-141883400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:141881600-141884800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:141881800-141882600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:141882200-141882600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:141882200-141883200	Weak transcription	Fetal Heart	heart
6	chr6:141882400-141883000	Enhancers	HUVEC	blood vessel

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