Variant report

Variant	rs35807663
Chromosome Location	chr6:141808429-141808430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:141807979-141808505	ECC-1	luminal epithelium:	n/a	chr6:141808269-141808285 chr6:141808268-141808285
2	NFIC	chr6:141808020-141808610	ECC-1	luminal epithelium:	n/a	chr6:141808269-141808285 chr6:141808268-141808285
3	NFIC	chr6:141807950-141808590	SK-N-SH	brain:	n/a	chr6:141808269-141808285 chr6:141808268-141808285

Variant related genes	Relation type
RN7SKP106	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10081087	0.85[EUR][1000 genomes]
rs13194017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201700	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13201721	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13201884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204687	0.87[EUR][1000 genomes]
rs13205547	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13206194	0.87[EUR][1000 genomes]
rs13208315	0.83[EUR][1000 genomes]
rs17177818	0.86[EUR][1000 genomes]
rs34014030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34169508	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551335	0.86[EUR][1000 genomes]
rs34848860	0.87[EUR][1000 genomes]
rs34993232	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35012669	0.90[EUR][1000 genomes]
rs35033152	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35089480	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35117219	0.83[EUR][1000 genomes]
rs35387389	0.86[EUR][1000 genomes]
rs35458980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35589888	0.87[EUR][1000 genomes]
rs35719146	0.87[EUR][1000 genomes]
rs35742539	0.87[EUR][1000 genomes]
rs35888899	0.86[EUR][1000 genomes]
rs36037029	0.86[EUR][1000 genomes]
rs36050873	0.87[EUR][1000 genomes]
rs36084040	0.87[EUR][1000 genomes]
rs4075995	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4397247	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398761	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4623253	0.87[EUR][1000 genomes]
rs66521742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66586120	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66870530	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66948099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67210523	0.87[EUR][1000 genomes]
rs67463968	0.86[EUR][1000 genomes]
rs6904106	0.87[EUR][1000 genomes]
rs6905974	0.90[EUR][1000 genomes]
rs6909964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924664	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749795	0.87[EUR][1000 genomes]
rs7750112	0.86[EUR][1000 genomes]
rs7756015	0.87[EUR][1000 genomes]
rs7766414	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7775688	0.86[EUR][1000 genomes]
rs9389924	0.90[EUR][1000 genomes]
rs9496053	0.87[EUR][1000 genomes]
rs9496054	0.87[EUR][1000 genomes]
rs9496058	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141805200-141809400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:141805200-141809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:141805800-141809400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:141806000-141809600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:141806000-141809600	Weak transcription	HUVEC	blood vessel
6	chr6:141806200-141809400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:141806200-141809400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:141806200-141809400	Weak transcription	HSMM	muscle
9	chr6:141806200-141809400	Weak transcription	NHDF-Ad	bronchial
10	chr6:141806200-141809600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:141806200-141809600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:141806200-141809600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:141806200-141827600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:141806400-141809400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:141806600-141809400	Weak transcription	NHLF	lung
16	chr6:141806800-141809200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:141806800-141809400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:141807000-141808800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:141807000-141809400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:141807000-141809400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:141807000-141809400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:141807000-141809400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:141807000-141809600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:141807000-141809600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:141807000-141809600	Weak transcription	Dnd41	blood
26	chr6:141807000-141809600	Weak transcription	Osteobl	bone
27	chr6:141807200-141809400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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