Variant report

Variant	rs34169508
Chromosome Location	chr6:141805035-141805036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10081087	0.85[EUR][1000 genomes]
rs13194017	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201700	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13201721	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13201884	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204687	0.87[EUR][1000 genomes]
rs13205547	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13206194	0.87[EUR][1000 genomes]
rs13208315	0.83[EUR][1000 genomes]
rs17177818	0.86[EUR][1000 genomes]
rs34014030	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34551335	0.86[EUR][1000 genomes]
rs34848860	0.87[EUR][1000 genomes]
rs34993232	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35012669	0.90[EUR][1000 genomes]
rs35033152	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35089480	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35117219	0.83[EUR][1000 genomes]
rs35387389	0.86[EUR][1000 genomes]
rs35458980	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35589888	0.87[EUR][1000 genomes]
rs35719146	0.87[EUR][1000 genomes]
rs35742539	0.87[EUR][1000 genomes]
rs35807663	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35888899	0.86[EUR][1000 genomes]
rs36037029	0.86[EUR][1000 genomes]
rs36050873	0.87[EUR][1000 genomes]
rs36084040	0.87[EUR][1000 genomes]
rs4075995	0.88[EUR][1000 genomes]
rs4397247	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398761	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4623253	0.87[EUR][1000 genomes]
rs66521742	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66586120	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66870530	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66948099	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67210523	0.87[EUR][1000 genomes]
rs67463968	0.86[EUR][1000 genomes]
rs6904106	0.87[EUR][1000 genomes]
rs6905974	0.90[EUR][1000 genomes]
rs6909964	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748087	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7749795	0.87[EUR][1000 genomes]
rs7750112	0.86[EUR][1000 genomes]
rs7756015	0.87[EUR][1000 genomes]
rs7766414	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7775688	0.86[EUR][1000 genomes]
rs9389924	0.90[EUR][1000 genomes]
rs9496053	0.87[EUR][1000 genomes]
rs9496054	0.87[EUR][1000 genomes]
rs9496058	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141803800-141805200	Active TSS	Primary T cells fromperipheralblood	blood
2	chr6:141803800-141805200	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:141803800-141805200	Active TSS	NHLF	lung
4	chr6:141803800-141805400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:141803800-141805400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:141803800-141806000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:141803800-141806000	Flanking Active TSS	Dnd41	blood
8	chr6:141803800-141806200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:141803800-141806200	Active TSS	Right Atrium	heart
10	chr6:141804000-141805200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr6:141804000-141805200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:141804000-141805200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:141804000-141805200	Active TSS	Aorta	Aorta
14	chr6:141804000-141805200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:141804000-141805200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:141804000-141805200	Active TSS	Fetal Lung	lung
17	chr6:141804000-141805200	Active TSS	Fetal Muscle Trunk	muscle
18	chr6:141804000-141805200	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr6:141804000-141805200	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:141804000-141805400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:141804000-141805400	Active TSS	A549	lung
22	chr6:141804000-141805400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:141804000-141806200	Enhancers	Fetal Thymus	thymus
24	chr6:141804200-141805200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr6:141804200-141805200	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr6:141804200-141805200	Active TSS	Psoas Muscle	Psoas
27	chr6:141804200-141805200	Active TSS	Stomach Smooth Muscle	stomach
28	chr6:141804200-141805200	Flanking Active TSS	NH-A	brain
29	chr6:141804200-141805400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr6:141804200-141805400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:141804400-141805200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:141804400-141805200	Active TSS	Brain Cingulate Gyrus	brain
33	chr6:141804400-141805200	Flanking Active TSS	HUVEC	blood vessel
34	chr6:141804600-141805200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:141804600-141805200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:141804600-141805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:141804600-141805200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:141804600-141805200	Active TSS	Colon Smooth Muscle	Colon
39	chr6:141804600-141805200	Flanking Active TSS	Fetal Heart	heart
40	chr6:141804600-141805200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:141804600-141805200	Active TSS	Ovary	ovary
42	chr6:141804600-141805200	Active TSS	Right Ventricle	heart
43	chr6:141804600-141805200	Active TSS	HSMMtube	muscle
44	chr6:141804600-141805400	Active TSS	NHDF-Ad	bronchial
45	chr6:141804600-141806200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:141804600-141807000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:141804800-141805200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:141804800-141805200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:141804800-141805200	Flanking Active TSS	Fetal Stomach	stomach
50	chr6:141804800-141805200	Active TSS	Left Ventricle	heart

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