Variant report

Variant	rs6905974
Chromosome Location	chr6:141794273-141794274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13194017	0.90[EUR][1000 genomes]
rs13201700	0.90[EUR][1000 genomes]
rs13201721	0.90[EUR][1000 genomes]
rs13201884	0.90[EUR][1000 genomes]
rs13204687	0.81[EUR][1000 genomes]
rs13205547	0.90[EUR][1000 genomes]
rs13206194	0.81[EUR][1000 genomes]
rs13208315	0.91[CEU][hapmap]
rs34014030	0.90[EUR][1000 genomes]
rs34169508	0.90[EUR][1000 genomes]
rs34848860	0.81[EUR][1000 genomes]
rs34993232	0.89[EUR][1000 genomes]
rs35012669	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35033152	0.90[EUR][1000 genomes]
rs35089480	0.86[EUR][1000 genomes]
rs35458980	0.90[EUR][1000 genomes]
rs35589888	0.81[EUR][1000 genomes]
rs35719146	0.81[EUR][1000 genomes]
rs35742539	0.81[EUR][1000 genomes]
rs35807663	0.90[EUR][1000 genomes]
rs36050873	0.81[EUR][1000 genomes]
rs36084040	0.81[EUR][1000 genomes]
rs4075995	0.82[EUR][1000 genomes]
rs4397247	0.89[EUR][1000 genomes]
rs4398761	0.90[EUR][1000 genomes]
rs4623253	0.81[EUR][1000 genomes]
rs66521742	0.90[EUR][1000 genomes]
rs66586120	0.90[EUR][1000 genomes]
rs66870530	0.90[EUR][1000 genomes]
rs66948099	0.90[EUR][1000 genomes]
rs67210523	0.81[EUR][1000 genomes]
rs6904106	0.81[EUR][1000 genomes]
rs6909964	0.90[EUR][1000 genomes]
rs6924664	0.90[EUR][1000 genomes]
rs7748087	0.90[EUR][1000 genomes]
rs7749795	0.81[EUR][1000 genomes]
rs7750112	0.80[EUR][1000 genomes]
rs7756015	0.81[EUR][1000 genomes]
rs7766414	0.90[EUR][1000 genomes]
rs7775688	0.80[EUR][1000 genomes]
rs9389924	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496053	0.81[EUR][1000 genomes]
rs9496054	0.81[EUR][1000 genomes]
rs9496058	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141786600-141796400	Weak transcription	HSMM	muscle
2	chr6:141787800-141795800	Weak transcription	Psoas Muscle	Psoas
3	chr6:141792800-141794600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:141793000-141794400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:141794000-141794600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:141794200-141794400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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