Variant report

Variant	rs35888899
Chromosome Location	chr6:141867246-141867247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10081087	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194017	0.86[EUR][1000 genomes]
rs13201700	0.86[EUR][1000 genomes]
rs13201721	0.86[EUR][1000 genomes]
rs13201884	0.86[EUR][1000 genomes]
rs13204687	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13205547	0.86[EUR][1000 genomes]
rs13206194	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13208315	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17177818	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17178941	0.87[AMR][1000 genomes]
rs34014030	0.86[EUR][1000 genomes]
rs34169508	0.86[EUR][1000 genomes]
rs34551335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34598247	0.91[ASN][1000 genomes]
rs34848860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34993232	0.85[EUR][1000 genomes]
rs35033152	0.86[EUR][1000 genomes]
rs35089480	0.82[EUR][1000 genomes]
rs35117219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35387389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35458980	0.86[EUR][1000 genomes]
rs35589888	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35719146	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35742539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35807663	0.86[EUR][1000 genomes]
rs36004278	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36037029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36050873	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36084040	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4075995	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4397247	0.85[EUR][1000 genomes]
rs4398761	0.86[EUR][1000 genomes]
rs4623253	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59234112	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66521742	0.86[EUR][1000 genomes]
rs66586120	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66870530	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66948099	0.86[EUR][1000 genomes]
rs67210523	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67463968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904106	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6909964	0.86[EUR][1000 genomes]
rs6924664	0.86[EUR][1000 genomes]
rs6939860	0.85[AMR][1000 genomes]
rs7748087	0.86[EUR][1000 genomes]
rs7749795	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750112	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756015	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7766414	0.86[EUR][1000 genomes]
rs7775688	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9496053	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496054	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496058	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3416837	chr6:141866859-141870357	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141827800-141870200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:141863400-141870400	Weak transcription	Muscle Satellite Cultured Cells	--

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