Variant report

Variant	rs6940301
Chromosome Location	chr6:15998136-15998137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15904579..15906820-chr6:15998091..16001553,3	K562	blood:
2	chr6:15990993..15994217-chr6:15996563..15999465,4	K562	blood:
3	chr6:15996739..15999476-chr6:16120909..16122978,2	K562	blood:
4	chr6:15991124..16001483-chr6:16127509..16131702,13	K562	blood:
5	chr6:15997683..16003574-chr6:16004515..16009156,15	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

rs_ID	r²[population]
rs4716020	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs67091502	0.82[ASN][1000 genomes]
rs9367887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9370849	0.85[CHB][hapmap]
rs9370853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9396623	0.85[CHB][hapmap]
rs9396626	0.90[ASN][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15994000-15998600	Enhancers	Adipose Nuclei	Adipose
2	chr6:15994000-15999000	Enhancers	Fetal Intestine Small	intestine
3	chr6:15994200-15998400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:15994200-15999000	Enhancers	Fetal Intestine Large	intestine
5	chr6:15994800-15998200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15994800-15999000	Enhancers	HUVEC	blood vessel
7	chr6:15995000-15998200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15995200-15998400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:15995400-15999600	Weak transcription	Lung	lung
10	chr6:15996400-15998200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:15996600-15999600	Weak transcription	Ovary	ovary
12	chr6:15996800-15998400	Enhancers	K562	blood
13	chr6:15997400-15998200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:15997600-15998600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:15997800-15998200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15997800-15998200	Enhancers	Left Ventricle	heart
17	chr6:15997800-15998400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:15997800-15998400	Enhancers	Placenta	Placenta
19	chr6:15997800-15998600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:15997800-15998600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:15997800-15998600	Enhancers	Psoas Muscle	Psoas
22	chr6:15997800-15998800	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:15997800-15999000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:15997800-15999000	Enhancers	Fetal Lung	lung
25	chr6:15998000-15998200	Bivalent Enhancer	Liver	Liver
26	chr6:15998000-15998200	Enhancers	Small Intestine	intestine
27	chr6:15998000-15998600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:15998000-15998800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:15998000-15998800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:15998000-15999000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:15998000-15999800	Enhancers	H9 Cell Line	embryonic stem cell

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